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Archive for the ‘Regulated Product Submissions (RPS)’ Category

A number of good articles related to eSubmissions have been posted online recently.  Below, a recap based on posts from my twitter account, www.twitter.com/kathie_clark.  

In Standards news:

Finally, a few upcoming conferences have been announced:

 

Recently, I was providing some training to a GlobalSubmit client and one of the participants asked me about an xml document that was present in a folder along with the sample eCTD that we use for training.  The document was called “porp.xml”.  I explained that GlobalSubmit’s VALIDATE product can transform eCTD into RPS and when it does, it produces the XML backbone used for RPS, which is called porp.xml.  This is a single xml document that replaces eCTD’s index.xml, regional xml, and study tagging files.

The next question was “Why in the world is it called porp?”  I couldn’t answer that one.  But recently, I attended several training classes held by the font of all RPS knowledge, GlobalSubmit’s CTO Jason Rock.  I took advantage of that opportunity to gain insight into what is different about RPS xml when compared to eCTD xml.  [For the record, it’s called porp.xml because it had to be different than eCTD – and porp is a combination of po, the business domain within HL7, and rp for regulated product.]

But on to bigger topics.  I, along with most other remotely technical people who have dabbled in eCTD for years, am pretty comfortable with eCTD xml.  I can create the xml for a sequence by hand, and I can look at a sponsor’s xml and figure out what it represents and what is wrong with it.  But when I look at the xml for RPS, all bets are off.  Jason walked us through the xml in our training class and here are some of the observations that I made:

  • With RPS, any pretense of representing the xml as “human readable” is over.  New code systems and levels of indirection make this almost impossible.
  • The table of contents is not readily apparent.  It’s created by combining a content code and keywords to determine placement within the TOC or tree.  For example, the location of a drug substance specification would be determined by a code representing its document type and then several keywords representing substance name and possibly manufacturer - not by nesting the document within a TOC section.
  • Everything is referenced by ID.  For example, a Context of Use (sort of the replacement for a leaf) contains references to the ID of a content file, as well as any keywords necessary, such as a code representing a specific route of administration or species.  Instead of just looking at something like a study ID, you see a code representing the study ID which you must then locate.
  • IDs themselves are more complex.  With RPS, IDs must be either an OID or a GUID.  An OID is formed by taking a unique numeric string (e.g. 1.3.5.7.9.24.68) and adding additional digits in a unique fashion (e.g. 1.3.5.7.9.24.68.1, 1.3.5.7.9.24.68.2, 1.3.5.7.9.24.68.1.1, etc.).   A GUID is a 32 character hexadecimal character string, such as {21EC2020-3AEA-1069-A2DD-08002B30309D}.  Either way, they are much less easy to identify visually that the simpler IDs used by most of today’s eCTD publishing tools.
  • Many new concepts are introduces such as “Sets” (the equivalent of version trees in a document management system), explicit ordering of elements (a concept not present in eCTD, although many people assume it is), and status (active vs. obsolete, applies to keywords as well as documents).

The bottom line is that RPS XML is only for the brave.  Most of those intrepid souls creating XML by hand for eCTD will have to give up that practice, and everyone will need to ensure that they have a publishing vendor who is highly knowledgeable concerning the standard and who is able to produce very high quality software.

For those of you who would like to see what RPS xml looks like, check out Example RPS Code:  BLA Multiple Sequence along with other Informational Documents (i.e. Plans, Rosters, RPS Technical Walkthrough, Implementation Guide, etc. on the RPS wiki.  

Advanced eCTD and the Educated Sponsor

posted by Kathie Clark @ 6:31 PM
Monday, May 10, 2010

This week’s blog posting is from Rahul Mistry, CEO of GlobalSubmit, who recently was a featured speaker at the RAPS workshop entitled “Advance eCTD Submissions”.  Rahul’s presentation focused on eCTD quality, a topic that obviously interested the audience based on the significant number of questions that he received.    

Two weeks ago I had the pleasure at presenting at an Advanced eCTD Workshop hosted by RAPS in Rockville, MD. During the course of three days, I had the pleasure of speaking and listening with a number of people from different companies. Here is what I learned:

  • While the workshop provided for an international perspective on eCTD, most attendees wanted to focus on the US. It became apparent that the primary strategy of many companies is to produce all US submissions in electronic format, and handle other regions as a secondary goal, if at all.
  • There continues to be confusion on regulatory activities, and, specifically how to correctly use the related sequence tag in the regional XML file. Please see the article “Secrets of eCTD Related Sequences” for details.
  • The FDAs infrastructure and current practices are of particular interest. During my presentation I was able to address a number of questions including the FDAs severity levels, and what the consequences are of errors in a sponsor’s submission.
  • Most people are not aware of the advantages of using fillable forms for the FDA which is the ability to automate the integration of a submission with other systems that exist at the FDA, such as submission tracking.
  • There was great interest on RPS and how it will impact the day-to-day lives of a publisher. The reality is that there will be very little that changes for sponsors – the big changes are for the vendors who need to update their software, and even of then, the change is minimal. A fair analogy would be saving a Microsoft Word document as Word Perfect or PDF file. The author using Microsoft Word need not know how Word Perfect saves its files; rather it is Microsoft’s responsibility that they save the document correctly.

A Compendium of Recent eCTD and eSubmissions News (Part 1)

posted by Kathie Clark @ 2:03 AM
Thursday, March 25, 2010

Some people who read this blog may be aware that I also post eCTD-related updates on my twitter account (www.twitter.com/kathie_clark).  I use this medium to post agency news updates, information I hear from the regulators, and interesting articles or presentations that I come across.  For more significant news, I usually follow up with a blog posting.

Recently, several people who read the blog have told me that, due to company restrictions, they are not able to follow twitter updates.  In addition, there are certainly people who just don’t like twitter (and I can sympathize as there is certainly a lot more trivia and minutia than useful content on most twitter postings).  These colleagues have suggested that I periodically summarize the more interesting information I post on twitter on a blog posting as well.  Today, I’m taking them up on that suggestion.  For part 1, here is a variety of news I posted on Twitter since February 1, 2010, related to interesting white papers, webinars, presentations, blog postings, and online articles.  Next post will feature agency news, documents and presentations.

Interesting White Papers, Webinars and Presentations

Online Articles and Blog Postings 

So, to wrap up: if you have made it this far and found “news you can use” in this article, you may want to consider following me on Twitter so you get a more timely update.  If you have a twitter account, this is easy to do, but even if you don’t, you can just go to the web page www.twitter.com/kathie_clark for the latest updates (and the last three tweets always appear on the upper left column of this blog).  You may also want to follow my company, GlobalSubmit, at www.twitter.com/globalsubmit.  You don’t actually need a twitter account to do this.

Regulated Product Submission (RPS) Clear First Hurdle

posted by Jason Rock @ 1:06 AM
Wednesday, January 20, 2010

Our posting this time is from Jason Rock, GlobalSubmit CTO and Chair of the HL7 RPS Specification Development Group.

The Draft Standard for Trial Use (DSTU) ballot of the Regulated Product Submission Release 2 standard barely passed ballot on Monday January 11th. The ballot passed by two votes with a result of 53 affirmative and 33 negative.

Even though the ballot passed, the process is not over. Every comment must be evaluated. This process can take months. Most projects try to resolve comments to the satisfaction of the commenter, but this is not a requirement.

One of my responsibilities as Chair of the HL7 Specification Development Group is to manage the ballot process. In that role, I have already compiled all of the comments. There are over 180 comments in total. Each comment has a proposed resolution. Nearly 150 of the comments were accepted or accepted with minor alteration. It is the last 30 comments that will be most difficult to resolve. I believe that the comment evaluation should run smoothly though, and not hold up the process.

Of the 150 comments that were accepted, some were related to words that addressed two-way communication which is not supported at this time. These words were originally added for release one, but will now be removed. The vast majority of comments were updates to text, either in relation to correcting typos or offering suggestions to help make the text more clear.

I expect that the ballot will be altered with the text changes, but that the model will not change. I also expect the FDA to start testing at the beginning of the third quarter, 2010.

Updates from the Regulators – EMEA

posted by Kathie Clark @ 12:49 AM
Wednesday, January 13, 2010

Attending the DIA EU EDM Conference in December gave me a great opportunity to catch up on eCTD-related status and activities at various European agencies.  We heard from a number of presenters representing EMEA (now just European Medicines Agency), the MEB, SwissMedic, and AGES PharmMed.  Since the updates are fairly lengthy, today I’ll cover EMEA,  and will address the other agencies in a future posting.

Tim Buxton gave the update from the EMEA.  He clarified what eCTD implementation means to this agency:

  • Electronic-only submissions are accepted
  • The eCTD is accepted as a ‘common currency’ for product marketing authorization applications - EMEA expects to receive marketing authorization applications & variations in eCTD format
  • The use of the eCTD is supported on the “agency side” by appropriate SOPs for receipt, validation, storage etc.
  • The use of the eCTD is supported on the “agency side” by appropriate business processes
  • The technical infrastructure is in place to support the foregoing

EMEA now receives over 500 eCTD sequences a month.  In November, they also received 149 NeeS sequences.  (A further update can be found in the recently published Update on the implementation of the EU Telematics strategy, which states that since July 1st 2008, over 2,500 eCTD submissions have been received by EMEA, and 406 centrally-authorised products are managed in eCTD format, representing more than two thirds of the total number of centrally-authorised products).

electronic Application Form (eAF)

Although this was an important initiative for the EMEA, adoption has not been good in the past because no tool was provided to create this XML document. The upcoming release of the eMF will include a Data Exchange Standard, receiving tool (initially EMEA only), authoring tool, and validation tool.  Prototypes of the receiving tool and authoring tool under evaluation. Support for variations is still under development.

PIM

Likewise, for PIM, EMEA is delivering a Data Exchange Standard, PIM Review System, PIM Light Authoring Tool, and PIM Data Validation Engine.  A statement of intent and migration details are still in pilot.  The timetable for PIM (from the Statement of Intent) is:

  • Q2 2009: Detailed planning of migration and Proof of Concept
  • Q1 2010: Migration commences
  • Q3 2010: Planned end of pilot phase comes (no longer need permission to submit)
  • Q4 2011 (end): migration exercise complete

There has been a change of approach for migration to PIM - EMEA had planned to migrate sponsor’s data but sponsors want to do it themselves with “hand holding”.

eSubmission Gateway

The eSubmission Gateway is in production for ICSRs and has been tested for MAAs.  Tim characterized the go-live of the gateway as “around the corner” (but said he was glad that he declined to commit to a date at the DIA annual back in June).

Digital Signatures

A limited pilot was being conducted for digital signatures, but is on hold right now due to other priorities.  It won’t be completed in 2010, but may be implementatd in 2011.  SAFE is a not the only valid form of eSig.  Rules in some countries specify some types of electronic signatures.  The EC has just released a call for ideas on how to harmonize eSignatures requirements across Europe.  To quote Tim - “The storm for eSig is just around the corner – ignore at your own peril.”

Other Initiatives

Other current initiatives include identification of medicinal products, and ICSRs (update of E2B standard for better ID of medicinal products causing problems).

Upcoming initiatives include eCTD Next Major Version (Regulated Product Submissions) – by the way EMEA has just added a web page for this topic, including links to last year’s meeting minutes.

New Q&A/Change Request Tracking Table

In other EMEA news, a new version (V1.21) of the EU Telematics EU eCTD Change Request/Q&A Tracking Table has been posted.  This is an update following discussion of open CRs by the TIGes subgroup, and general review of status and presentation of all CRs. All closed/withdrawn/rejected/duplicated CRs have been moved to new worksheets; all CRs implemented in EU M1 v1.4 were moved to the appropriate ‘Implemented in EU M1 v1.4′ worksheet. Most importantly, all CRs for a potential EU M1 v1.4.1 (spec update only) have been identified and marked.

Updates from the Regulators: FDA

posted by Kathie Clark @ 1:36 AM
Tuesday, December 15, 2009

Announcement: See GlobalSubmit’s web site for a brand new presentations page linking to recent agency presentations!

GlobalSubmit recently attended two informative DIA conferences:

  • The 8th Annual Electronic Submissions Conference “eCTD: The Adventure Continues” in San Diego
  • The 10th Conference on European Electronic Document Management in beautiful Vienna, Austria

During these conferences, industry received updates from a number of regulators, including the FDA, Health Canada, the European Medicines Agency, the MEB, AGES PharmMed, and SwissMedic.  In my next series of blog postings, I’ll be passing on interesting news from the regulators.  Since there’s quite a bit of material, I’ll cover it in three postings: US, Canada, and Europe.

The FDA’s presentations focused on three major areas:

  • Status and metrics for various initiatives
  • Data standards
  • Study Tagging Files

Status and metrics for FDA initiatives

Gary Gensinger provided updates in both San Diego and Vienna. Some of the more significant metrics included:

  • The percentage of IND Originals in electronic and standardized format remained relatively stable, the number of amendments in electronic and standardized formats have nearly doubled.
  • The percentage of new NDAs/Supplements submitted electronically has remained relatively stable, the number submitted in eCTD format rose between 28% to 51%
  • Of original NDAs submitted in FY 09 94 out of 131 (72%) were in eCTD format)       
  • If mixed submissions (paper & electronic) are included, the percentages around new NDAs/Supplements with electronic components approach 90+%
  • The total number of eCTD sequences submitted to date is over 98,000, with almost 5000 eCTD sequences received every month in recent months
  • SPL submissions have also increased dramatically, and are approaching 2000 per month
  • CDER gateway submissions also approach 5000 / month

Gary spoke about the importance of the emerging RPS standard.  He emphasized that RPS is critical to FDA’s meeting their PDUFA IV commitments – as well as supporting their goal of to conducting all their business electronically.  Gary referenced a Draft Standard for Trial Use (DSTU) date of January 2010, and a target acceptance date for RPS Submissions for drugs and biologics of the 4th quarter of 2011.

Gary also provided an update on the DARRTS initiative.  DARRTS is “A flexible, integrated, fully electronic workflow tracking and information management system to receive, log, track, assign, process, and manage official submissions with internal and external stakeholders. The system maintains the official submission records and will manage and track all communications and documentation concerning submission.”  Release 3 of DARRTS was implemented successfully in July 2009, resulting in the retirement of 17 legacy systems. Phase 4 (CDER and CBER BLAs) is being planned.

Data Standards

Lilliam Rosario described a major FDA challenge: The FDA receives massive amounts of clinical research data in extremely disparate formats, using a variety of proprietary standards. This makes it extremely difficult, if not impossible, to do cross-study and application reviews.

FDA has been working towards a standardized approach to capture, receive, and analyze study data.   Standardization of study data is vital to integrate pre-marketing study data and post-marketing safety data to improve public health and patient safety. Central to this vision is the creation of an enterprise data infrastructure within FDA to improve the management of all structured scientific data (Janus).

Data standards to support this vision are needed in three broad categories: Exchange standards, analysis standards, and terminology standards.  FDA is moving towards XML exchange standards based on the HL7 Reference Information Model to submit study data to the FDA. FDA is also currently working on a proposed rule that would require the electronic submission of study data to the FDA. Study data content for creation of SDTM views will be sent to FDA as an XML files modeled using the HL7 RIM.

Study Tagging Files

Virginia Ventura of the Office of Business Process Support spoke on “Study Tagging Files: Their Vital Role In Submissions To The FDA.”

Virginia described some of the most common problems she sees with STFs:

  • Not using STFs
  • Using STFs for only some of the study documents, and not all
  • Modifying the study title results in additional study structures (even if the study ID remains the same)
  • Using the same study tag for all documents or tagging a document with an incorrect tag

She clarified that an STF is needed any time you are including documents in Modules 4 or 5, except 5.2 Tabular Listings, and 4.3 or 5.4 Literature references.

A case study provided by Virginia should give sponsors pause. 

  • An original NDA (0000) was submitted in May ’09, and the Sponsor used no STFs.  The eCTD was unreviewable, and the review clock was stopped.
  • The sponsor submitted corrections in June, but the sponsor’s correction did not resolve the problem – the eCTD was still not reviewable. The sponsor then submitted a third sequence as “original” in late August.
  • The sponsor lost 2 ½ months due to this issue.
  • The issue required numerous communications between the FDA PM, ESUB and the sponsor.

She continued by providing descriptions of additional problems and their correction strategies:

  • Study under wrong heading element
  • Created wrong indication under 5.3.5.1
  • Multiple study structures for one study
  • Referenced documents in the wrong STF

And wrapped up with some sound advice if you run into problems:

  • Contact ESUB@fda.hhs.gov 
  • Please follow ESUB’s technical advice for fixing
  • If unable to follow ESUB’s advice on your own, get professional help
  • Do not attempt multiple fixes that are unproven –this can make a bad situation worse

Next time… Health Canada news.

Analysis: New ICH M2 Requirements into eCTD NMV (=RPS)

posted by Kathie Clark @ 3:08 AM
Wednesday, November 18, 2009

The ICH M2 ESTRI Main Page has been updated with the following announcement:

“ICH M2 has initiated the development of the Next Major Version of the eCTD (eCTD NMV) to improve robustness, flexibility and long term stability of the message. In accordance with the decision by the ICH Steering Committee that technical specifications should no longer be developed solely within ICH, but should be created in collaboration with Standards Development Organisations (SDOs), the eCTD NMV will be developed jointly with the HL7 RPS project. M2 has developed this list of requirements as input into the HL7 RPS Project.”

I took a look at the requirements (which have been posted before in various drafts).  They stretch to nine pages, and range from some that are uncontroversial and obvious to some that signal a significant change in direction.  In this posting, I point out some of the more interesting requirements.

Regulatory Activities

The new spec really supports the concept of organizing sequences into regulatory activities.  A regulatory activity is a collection of sequences that lead to a decision by the regulatory agency (such as an MAA, Variation, NDS, SNDS, Original NDA, Supplement, etc.) which can be mapped to individual ICH-regional regulatory processes.  This concept does not exist in ICH eCTD, although the regional authorities have added it using the concept of “related sequence.”  The NMV spec includes a number of formal requirements to support the Regulatory Activity concept.

Cross Application References

Current eCTD does not support cross application references, but neither does it prohibit their use.  The only authority to my knowledge who actively supports them is the FDA (who will send you a document providing directions if you email them at esub@fda.hhs.gov ).  EMEA expressly forbids them.

The new spec explicitly supports them as shown in the following requirements:

  • Files should only need to be submitted once to a Health Authority and can be included by reference in multiple regulatory submissions to support multiple regulatory actions even across applications
  • The message should support the reuse of electronic files from a previously submitted instance across applications.

Future of Study Tagging Files (STFs)

When I first read the requirement

When the same documentation is provided, it should be submitted in the same way across HAs. For example, when a study report is submitted in US it is submitted using the STF which is not acceptable in other HAs. This minimizes reuse capabilities and adds to Industry costs to prepare globally harmonized dossiers.

I wasn’t sure if ICH was suggesting that the STF concept should go away altogether.  I asked my colleague Jason Rock, who represents the FDA at ICH M2.  Jason explained that the goal was to do away with the STF as a separate XML file.  STF information would be contained in the main backbone, and could be ignored by authorities who don’t want it.   This was also confirmed in a later requirement reading “STF construct should be integrated into the message standard.”

Maintenance of Metadata:

Many sponsors have experienced problems with their eCTD due to the inability of the standard to accommodate corrections or changes in metadata (such as manufacturer).  eCTD NMV requirements include the requirement for the message to support the addition, updating and deletion of metadata to a previously submitted instances, e.g., related sequences, submission type, operation attribute, manufacturer name, etc.

Lifecycle

New NMV requirements regarding lifecycle are likely to be applauded by sponsors:

  • Replacement of multiple leafs with single leaf and vice versa should be supported in eCTD.
  • The operation attribute value “append” be removed from the list of allowed values (leaving only new, replace and delete)
  • Allow a replace or delete leaf to modify more than one leaf in a previous sequence or sequences
  • Allow a single leaf to be “modified” by more than one leaf in later sequences (supports changes in granularity)

Physical File Rules

The days of relying on a standard folder structure for XML-based eSubmissions are coming to an end as all parties move to acknowledge that they should be using the backbone/TOC and not the file system.  The NMV spec includes a requirement that “The physical file structure. (file/folder structure) should be minimal”.

File names would also be able to include underscores, which will come as a relief to anyone who has struggled with if or how to eliminate underscores from SAS file names.

Logical Groupings

New mechanisms for grouping files at levels below sections are called for:

  • Provide ability to group a collection (or set) of files that together represent a document or reviewable grouping (e.g, all files related to a study report, all files related to a labeling document, all files related to a manufacturer or manufacturing component (e.g., container closure))
  • Provide ability to treat a grouping of files as a single entity and to be treated as if it were a single file (complete with all descriptive attributes e.g., title) for all life cycle operations and relationship management and reuse needs

Scope

An important architectural concept for eCTD NMV/RPS is the separation of the messaging mechanism from the TOC.  The TOC is no longer built into the specification, but supplied by the regional authorities.  This is encapsulated in the requirement “Allow the capacity to modify the ICH CTD organizational structure (ToC) without modifying or changing the eCTD message structure.”

Compatibility

For those worried about the impact of the switch on their current eCTDs, some compatibility requirements should provide some reassurance:

  • It should be possible for an applicant to build on an eCTD lifecycle started using the eCTD 3.2.x specification and continued using the eCTD NMV specification.
  • No applicant should be required to resubmit data in the eCTD NMV specification if it has previously been submitted using the eCTD 3.2.x specification.

RPS Working Group Meeting in Atlanta

posted by Jason Rock @ 1:27 AM
Thursday, October 1, 2009

The RPS (Regulated Product Submissions) Working Group met last week in Atlanta.  The main discussion points were around ICH requirements, multi product submission, facility submissions, linking to other applications, multi regulator submission and how should the project be managed going forward.

All current ICH requirements were reviewed. Most of the requirements are already met. Some more requirements need to be addressed.

I expect both Europe and Japan, in regards to human pharmaceutics, to submit new requirements in the next 3-6 months either through ICH or directly. I would not expect these requirements to be ground breaking.

Device attendance was lower than I hoped; but they were present. To gather more support within the device community, the device folks would like to have a joint project with ISO TC 210 Quality management and corresponding general aspects for medical devices. This is different TC that the human pharmaceutics folks are accustomed to work with, namely, ISO TC 215 Health Informatics.

There was a small change to the management process; that is, less phone calls.

The next milestone for the project is the January DSTU ballot. I would expect the FDA to test the draft standard, and depending on the test results, implement.

RPS News

posted by Kathie Clark @ 10:15 AM
Wednesday, September 2, 2009

The RPS (Regulated Product Submissions) Working Group is preparing for a September 23 working group meeting in Atlanta.  Topics include:

  • Discussion of  analysis of ICH requirements list (by the way, were you aware that a list of ICH eCTD Next Major Version (NMV) requirements is available?) and multi-regulatory submissions
  • Complexities around two-way communication for Master Files
  • Labeling confidential information
  • File and folder rules (I thought these were going away!!)
  • Hyperlinking

Just a reminder that all sorts of good stuff is on the HL7 RPS Wiki!

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